Metabolic plasticity supports a flexible nutritional symbiosis in Cardiocondyla ants (supplementary code and tables for reproducibility)

Nutritional symbioses have repeatedly evolved in insects, yet how hosts regulate these partnerships to balance benefits across development and environments remains unclear. Ants provide an exceptional system to address this question, as several lineages maintain ancient symbionts that can be naturally lost without harming the host. Using Cardiocondyla obscurior, which carries and occasionally loses the vertically transmitted symbiont Cand. Westeberhardia cardiocondylae, we reveal the regulatory dynamics and function of this labile association. Symbionts provide shikimate-derived nutrients that enhance colony resilience under protein limitation, while hosts actively regulate symbiont abundance during protein scarcity and cuticle formation to optimise resource allocation. In the symbiont’s absence, ants compensate by upregulating genes enabling tyrosine acquisition from external sources. This metabolic flexibility allows colonies to exploit symbiont-derived and environmental nutrients, sustaining both growth and survival across nutritional contexts. Our findings reveal dynamic host regulation as a mechanism sustaining the persistence and adaptability of ancient symbioses.