TFBS Enriched Sequences Datasets.

aNote that the Robertson et al. STAT1 sequences contain two sets: an interferon γ stimulated dataset and unstimulated dataset.
bFor p53 and c-MYC we consider both the noisier set of sequences that were represented by two PETs and a smaller and less noisy set (suffixed by “_PET3”) of sequences that were represented by at least three PETs. For every dataset we created a negative dataset as described in Protocol S1.
cBoth Chip-seq and ChipSeq (as referred by the authors) use Illumina 1G system as platform. ChIP-PET methodology is described in [14]. ChIP-chip refers to 38 Affymetrix genomewide chips and ChIP-microarray refers to an Agilent promotors microarray.