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Mixture of archaeal and bacterial synthetic communities. synthetic metagenome

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NIAID Data Ecosystem2026-03-09 收录
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https://www.ncbi.nlm.nih.gov/bioproject/PRJNA324724
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Genomic DNA extracted from 40 bacterial and 14 archaeal taxa was combined to create a 54 taxa mock community:Escherichia coli (Proteobacteria), 51% GC, 25% abundance; Burkholderia sp. (Proteobacteria), 67% GC, 20% abundance; Rhizobium sp. (Proteobacteria), 59% GC, 6.21% abundance; Acinetobacter gyllenbergii (Proteobacteria), 41% GC, 3.3% abundance; Methanococcus maripaludis C5 (Euryarchaeota), 33% GC, 3.3% abundance; Methanosphaera stadtmanae MCB3 (Euryarchaeota), 28% GC, 2.93% abundance; Nanoarchaeum equitans Kin4-M (Nanoarchaeota), 32% GC, 2.93% abundance; Hydrogenobaculum sp. Y04AAS1 (Aquificae), 35% GC, 2.29% abundance; Bacillus cereus str. 1 (Firmicutes), 38% GC, 2.29% abundance; Enterococcus faecalis V583 (Firmicutes), 38% GC, 1.82% abundance; Thermus thermophilus HB8 (Deinococcus-Thermus), 70% GC, 1.82% abundance; Sulfitobacter sp. NAS-14.1 (Proteobacteria), 60% GC, 1.36% abundance; Chlorobium limicola DSM 245 (Chlorobi), 51% GC, 1.36% abundance; Methanosarcina sp. (Euryarchaeota), 39% GC, 1.28% abundance; Chlorobium tepidum TLS (Chlorobi), 57% GC, 1.28% abundance; Chlorobium phaeobacteroides DSM 266 (Chlorobi), 48% GC, 1.19% abundance; Nitrosomonas europaea ATCC 19718 (Proteobacteria), 51% GC, 1.19% abundance; Archaeoglobus fulgidus DSM 4304 (Euryarchaeota), 49% GC, 1.09% abundance; Herpetosiphon aurantiacus ATCC 23779 (Chloroflexi), 51% GC, 1.09% abundance; Thermoanaerobacter pseudethanolicus ATCC 33223 (Firmicutes), 35% GC, 0.98% abundance; Pyrobaculum calidifontis JCM 11548 (Crenarchaeota), 57% GC, 0.98% abundance; Pyrobaculum aerophilum str. IM2 (Crenarchaeota), 51% GC, 0.89% abundance; Thermotoga petrophila RKU-1 (Thermotogae), 46% GC, 0.89% abundance; Thermotoga neapolitana DSM 4359 (Thermotogae), 47% GC, 0.88% abundance; Deinococcus radiodurans R1 (Deinococcus-Thermus), 67% GC, 0.88% abundance; Persephonella marina EX-H1 (Aquificae), 37% GC, 0.82% abundance; Methanobrevibacter sp. (Euryarchaeota), 51% GC, 0.82% abundance; Salinispora tropica CNB-440 (Actinobacteria), 69% GC, 0.79% abundance; Bacteroides vulgatus ATCC 8482 (Bacteroidetes), 42% GC, 0.79% abundance; Treponema denticola (Spirochaetes), 38% GC, 0.7% abundance; Geobacter sulfurreducens PCA (Proteobacteria), 61% GC, 0.7% abundance; Caldicellulosiruptor bescii DSM 6725 (Firmicutes), 35% GC, 0.63% abundance; Chlorobium phaeovibrioides DSM 265 (Chlorobi), 32% GC, 0.63% abundance; Clostridium thermocellum ATCC 27405 (Firmicutes), 39% GC, 0.52% abundance; Sulfurihydrogenibium sp. YO3AOP1 (Aquificae), 32% GC, 0.52% abundance; Shewanella baltica OS185 (Proteobacteria), 46% GC, 0.45% abundance; Salinispora arenicola CNS-205 (Actinobacteria), 70% GC, 0.45% abundance; Porphyromonas gingivalis ATCC 33277 (Bacteroidetes), 48% GC, 0.44% abundance; Methanobacterium sp. (Euryarchaeota), 33% GC, 0.44% abundance; Sulfolobus tokodaii str. 7 (Crenarchaeota), 33% GC, 0.41% abundance; Pyrococcus horikoshii OT3 (Euryarchaeota), 42% GC, 0.41% abundance; Bordetella bronchiseptica RB50 (Proteobacteria), 68% GC, 0.41% abundance; Gemmatimonas aurantiaca T-27 (Gemmatimonadetes), 64% GC, 0.41% abundance; Methanocaldococcus jannaschii DSM 2661 (Euryarchaeota), 31% GC, 0.32% abundance; Chloroflexus aurantiacus J-10-fl (Chloroflexi), 57% GC, 0.32% abundance; Bacteroides thetaiotaomicron VPI-5482 (Bacteroidetes), 43% GC, 0.3% abundance; Rhodopirellula baltica SH 1 (Planctomycetes), 55% GC, 0.3% abundance; Methanopyrus kandleri AV19 (Euryarchaeota), 61% GC, 0.25% abundance; Nostoc sp. PCC 7120 (Cyanobacteria), 41% GC, 0.25% abundance; Bacillus cereus str. 2 (Firmicutes), 38% GC, 0.22% abundance; Burkholderia xenovorans LB400 (Proteobacteria), 63% GC, 0.1% abundance; Acidobacterium capsulatum ATCC 51196 (Acidobacteria), 61% GC, 0.1% abundance; Methanobrevibacter smithii PS (Euryarchaeota), 31% GC, 0.04% abundance; Leptothrix cholodnii SP-6 (Proteobacteria), 69% GC, 0.04% abundance;
创建时间:
2016-06-07
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