Concatenated SBWT bit vectors
收藏NIAID Data Ecosystem2026-05-01 收录
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资源简介：
The concatenated bit vectors from the "plain matrix" of the SBWT proposed by Alanko, Puglisi and Vuohtoniemi[1]. The SBWT in question is built based on a set of 17,336,887 Illumina HiSeq 2500 reads of length 502 sampled from the human gut (SRAidentifier ERR5035349) in a study on irritable bowel syndrome and bile acid malabsorption[2] with k-mer size 31.
[1] Jarno N. Alanko, Simon J. Puglisi, and Jaakko Vuohtoniemi. Small searchable κ-spectra via subset rank queries on the spectral burrows-wheeler transform. In Jonathan W. Berry, David B. Shmoys, Lenore Cowen, and Uwe Naumann, editors, SIAM Conference on Applied and Computational Discrete Algorithms, ACDA 2023, Seattle, WA, USA, May 31 - June 2, 2023, pages 225–236. SIAM, 2023. doi:10.1137/1.9781611977714.20.
Ian B Jeffery, Anubhav Das, Eileen O’Herlihy, Simone Coughlan, Katryna Cisek, Michael Moore, Fintan Bradley, Tom Carty, Meenakshi Pradhan, Chinmay Dwibedi, et al. Differences in fecal microbiomes and metabolomes of people with vs without irritable bowel syndrome and bile acid malabsorption. Gastroenterology, 158(4):1016–1028, 2020.
创建时间：
2024-04-22
