Additional file 3 of Genome-wide gene expression changes of Pseudomonas veronii 1YdBTEX2 during bioaugmentation in polluted soils

Additional file 3: DATA 1. Complete list of differentially expressed genes in APM-1H versus liquid-1H (FDR < 0.05). DATA 2. Enriched GO terms among the significantly differentially downregulated genes in cells growing on glass beads (APM) versus liquid media after 1 h inoculation. DATA 3. Complete list of differentially expressed genes in Sand-1H versus APM-1H (FDR < 0.05). DATA 4. Complete list of differentially expressed genes in Silt -1H versus APM-1H (FDR < 0.05). DATA 5. Complete list of differentially expressed genes in Clay-1H versus APM-1H (FDR < 0.05). DATA 6. Enriched GO terms among the significantly differentially upregulated genes in Sand versus APM after 1 h contact. DATA 7. Enriched GO terms among the significantly differentially expressed upregulated genes in Silt versus glass beads (APM) after 1 h contact. DATA 8. Enriched GO terms among the significantly differentially expressed downregulated genes in Silt versus glass beads (APM) after 1 h contact. DATA 9. Enriched GO terms among the significantly differentially expressed upregulated genes in Clay versus glass beads (APM) after 1 h contact. DATA 9. Enriched GO terms among the significantly differentially expressed downregulated genes in Clay versus glass beads (APM) after 1 h contact. DATA 11. Differentially expressed genes in all natural soils-1H vs controls-1 h (ANOVA. FDR < 0.05). DATA 12. Complete list of differentially expressed genes in Jonction-1H vs APM-1H (FDR < 0.05). DATA 13. Commonly differentially expressed genes in soils and Jonction soils after 1 h contact versus control conditions -1H (ANOVA. FDR < 0.05). DATA 14. Unique differentially expressed genes in Jonction-1H vs APM-1H. DATA 15. Enriched GO terms among the significantly differentially expressed upregulated genes in Jonction versus glass beads (APM) after 1 h contact. DATA 16. Enriched GO terms among the significantly differentially expressed downregulated genes in Jonction versus glass beads (APM) after 1 h contact. DATA 17. Comonly differentially expressed genes in Pseudomonas veronii cells growing exponentialy in Liquid, Sand and Silt vs same material -1H (FDR < 0.05). DATA 18. Enriched GO terms among the significantly differentially expressed upregulated genes in LIQUID-EXPO vs LIQUID-1 h. DATA 19. Enriched GO terms among the significantly differentially expressed downregulated genes in LIQUID-EXPO vs LIQUID-1 h. DATA 20. Enriched GO terms among the significantly differentially expressed upregulated genes in SILT-EXPO vs SILT-1 h. DATA 21. Enriched GO terms among the significantly differentially expressed downregulated genes in SILT-EXPO vs SILT-1 h. DATA 22. Enriched GO terms among the significantly differentially expressed upregulated genes in JONCTION-EXPO vs JONCTION-1 h. DATA 23. Enriched GO terms among the significantly differentially expressed downregulated genes in JONCTION-EXPO vs JONCTION-1 h. DATA 24. Complete list of differentially expressed genes in SILT-EXPO vs SILT-1H (FDR < 0.05). DATA 25. Complete list of differentially expressed genes in Jonction-EXPO vs JN-1H (FDR < 0.05). DATA 26. Commonly differentially express genes in APM and Silt in stationary phase (FDR < 0.05). DATA27. Unique differentially express genes Silt in stationary phase (FDR < 0.05). DATA 28. Unique differentially express genes in APM-STAT vs APM-1H (FDR < 0.05). DATA 29. Enriched GO terms among the significantly differentially expressed upregulated genes in SILT-STAT vs SILT-1 h. DATA 30. Enriched GO terms among the significantly differentially expressed downregulated genes in SILT-STAT vs SILT-1 h. DATA 31. Enriched GO terms among the significantly differentially expressed upregulated genes in AS-STAT vs AS-1 h . DATA 32. Enriched GO terms among the significantly differentially expressed downregulated genes in AS-STAT vs AS-1 h. DATA. Enriched GO terms among the significantly differentially expressed upegulated genes in LIQUID-STAT vs LIQUID-1 h. DATA. Enriched GO terms among the significantly differentially expressed downregulated genes in LIQUID-STAT vs LIQUID-1 h.