Phylogenomic species delimitation in the ants of the Temnothorax salvini Group (Hymenoptera: Formicidae): An integrative approach

The members of the Temnothorax salvini species group are rarely collected, arboreally nesting ants of Central American forests. Previously thought to consist of two broadly dispersed species, recent collections have revealed a diversity of specimens that defy the two-species salvini group concept, but these are difficult to distinguish from each other based solely on morphology. I contrast several model-based approaches to species delimitation based on target-enriched genomic data. With molecular data from thousands of ultraconserved elements (UCEs), mitochondrial genome sequences, and morphometric data, I use an integrated approach to species delimitation within the salvini group. Morphometric data were analyzed using cluster analysis of principal component analysis (PCA) output. I use several popular methods of molecular species delimitation, including bPTP, BPP, and STACEY, using a novel approach to filtering UCE data based on posterior predictive checks of nucleotide substitution mo...