Additional file 1 of Analysis of GWAS-nominated loci for lung cancer and COPD revealed a new asthma locus

Additional file 1: Table S1. Loci associated with lung cancer (LC) in GWAS performed in Caucasian cohorts. Table S2. Loci associated with chronic obstructive pulmonary disease in GWAS performed in Caucasian cohorts. Table S3. Association results for the chronic obstructive pulmonary disease loci in the Saguenay–Lac-Saint-Jean asthma familial cohort for genetic variants forming an haplotypic block with significant variants of the 2p24.3 locus in the combined analysis. Table S4. Associations with p < 0.05 for the lung cancer loci in the Saguenay–Lac-Saint-Jean asthma familial cohort, replication in two other cohorts and expression quantitative trait loci analyses in two immune cell types. Table S5. Associations with p < 0.05 for the chronic obstructive pulmonary disease loci in the Saguenay–Lac-Saint-Jean asthma familial cohort (SLSJ cohort), replication in another cohort and expression quantitative trait loci analyses in two immune cell types. Additional files with all GWAS loci identified in the literature for the lung cancer and chronic obstructive pulmonary diseases publications in the GWAS Catalogue, complete description of the 2p24.3 haplotype block and all significant associations found in the SLSJ cohort as well as eQTLs.