R script for identification and localisation of prophage within bacterial genomes using outward-oriented paired-end reads.
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This R script shows an analysis example of using outwards-oriented paired-end reads (OPRs), identified using the OPR finder function in the mVIRs package, to identify p22 in <em>S</em>. Tm LT2 as described in the publication "<strong>High throughput sequencing provides exact genomic locations of inducible prophages and accurate phage-to-host ratios in gut microbial strains" </strong>by Zünd et al. Microbiome (2021)
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2020-12-10
