five

Mapping of hns sites in Typhimurium 14028 using a tiling oligo array

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NIAID Data Ecosystem2026-03-07 收录
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https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE4879
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The NimbleGen array contains 387,000 46~50-mer oligos, including 377,230 salmonella probes whose sequences only hit genome once. The probes were designed based on Salmonella typhimurium LT2 (NC_003197) genome, with a moving window of about 12 bases. Raw intensities were normalized by the median intensity in each channel and the ratios were calculated by log base 2 (hns-bound DNA / genomic DNA) after the normalization. Keywords: ChIP-chip Two arrays were hybridized with Typhimurium 14028genomic DNA and hns-bound DNA from a chromatin immunoprecipitation with a Dye swap.
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2012-03-16
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