Additional file 2: Table S1. of ChiLin: a comprehensive ChIP-seq and DNase-seq quality control and analysis pipeline

Sheet1 ToolsComparison: ChIP-seq pipeline software comparison. Sheet2 Examples of ChiLin report. A summary of example data annotation of transcription factor, chromatin regulatory factor and histone modification ChIP-seq data. Sheet3 Protein classification standard for the 8 categories. Sheet4 Protein classification results. Sheet5 BWA QC Database. ChiLin samples and datasets quality metrics across three layers. A clean up table of cistrome samples and datasets quality metrics for ChiLin users’ reference. The QC results is based on the reference of hg38 and mm10 assembly. (XLSX 10363 kb)