Genomic data and common garden experiments reveal climate-driven selection on ecophysiological traits in two Mediterranean oaks

This release includes the different genomic datasets used in the article entitled "Genomic data and common garden experiments reveal climate-driven selection on ecophysiological traits in two Mediterranean oaks " by Ramírez-Valiente et al.,

File description:

Samples.xlsx: Description of individual and population codes used in the different analyses and genomic datasets.

Quercus_faginea_p12r05m05minMAF001_all_loci.str: Input file used to perform genetic clustering analyses (STRUCTURE and DAPC) for Quercus faginea including all loci.

Quercus_faginea_p12r05m05minMAF001_neutral_loci.str: Input file used to perform genetic clustering analyses (STRUCTURE and DAPC) for Quercus faginea excluding outlier loci (i.e., putatively under selection) identified by either BAYESCAN or using the FDIST method in ARLEQUIN.

Quercus_lusitanica_p7r05m05minMAF001_all_loci.str: Input file used to perform genetic clustering analyses (STRUCTURE and DAPC) for Quercus lusitanica including all loci.

Quercus_ lusitanica_p7r05m05minMAF001_neutral_loci.str: Input file used to perform genetic clustering analyses (STRUCTURE and DAPC) for Quercus lusitanica excluding outlier loci (i.e., putatively under selection) identified by either BAYESCAN or using the FDIST method in ARLEQUIN.

Quercus_faginea_p12r05m05minMAF001_BAYESCAN.txt: Input file used to perform BAYESCAN analyses for Quercus faginea.

Quercus_lusitanica_p7r05m05minMAF001_BAYESCAN.txt: Input file used to perform BAYESCAN analyses for Quercus lusitanica.

Quercus_faginea_p12r05m05minMAF001_ARLEQUIN.arp: Input file used to perform ARLEQUIN analyses for Quercus faginea.

Quercus_lusitanica_p7r05m05minMAF001_ARLEQUIN.arp: Input file used to perform ARLEQUIN analyses for Quercus lusitanica.

Quercus_faginea_p12r05m05minMAF001_all_loci.vcf: Variant call format (VCF) file for Quercus faginea including all loci.

Quercus_faginea_p12r05m05minMAF001_neutral_loci.vcf: Variant call format (VCF) file for Quercus faginea excluding outlier loci (i.e., putatively under selection) identified by either BAYESCAN or using the FDIST method in ARLEQUIN.

Quercus_lusitanica_p7r05m05minMAF001_all_loci.vcf: Variant call format (VCF) file for Quercus lusitanica including all loci.

Quercus_ lusitanica_p7r05m05minMAF001_neutral_loci.vcf: Variant call format (VCF) file for Quercus lusitanica excluding outlier loci (i.e., putatively under selection) identified by either BAYESCAN or using the FDIST method in ARLEQUIN.

Quercus_faginea_Greenhouse_DRIFTSEL.txt: Input file used to run DRIFTSEL and evaluate selection on the different studied traits for Quercus faginea under common garden greenhouse experiments.

Quercus_faginea_Outdoor_DRIFTSEL.txt: Input file used to run DRIFTSEL and evaluate selection on the different studied traits for Quercus faginea under common garden outdoor experiments.

Quercus_lusitanica_Greenhouse_DRIFTSEL.txt: Input file used to run DRIFTSEL and evaluate selection on the different studied traits for Quercus lusitanica under common garden greenhouse experiments.