Genome and Transcriptome references based on hg19 from UCSC, 2015

rsem.transcripts.nant2015.fa.gz - bgzipped FASTA reference of transcriptomes genome.nant2015.fa.gz - bgzipped FASTA human genome reference, with several viral sequences added. refseq.txt.gz - Exact sequence accessions and mapping coordinates for a RefSeq transcriptome based off the UCSC genome browser for hg19. Coordinates are BED-style, with one row per transcript, and 1+ transcript per gene. Column annotation 1. RefSeq Accession 2. Chromosome 3. Strand 4. thinStart (gene boundary, including UTR) 5. thinEnd (gene boundary, including UTR) 6. thickStart (CDS boundary) 7. thinStart (CDS boundary) 8. number of exons 9. comma separated exon starts 10. comma separate exon ends 11. common gene name 12. refseq gene id 13. 0 if non-primary transcript, 1 if primary transcript