Additional file 11 of FixNCut: single-cell genomics through reversible tissue fixation and dissociation

Additional file 11: Table 10. This table contains differentially expressed (DE) genes for human colon biopsies comparisons, considering all cell populations. The comparisons include: 1) fixed and fresh, 2) fixed and cryo, 3) fixed/cryo versus cryo, and 4) fixed/cryo compared with fixed samples. The analysis was performed using Seurat MAST, and genes were considered DE with a FDR adjusted p-value < 0.05 and present in at least 10% of cells (see Methods). A positive Log2FC indicates higher expression in fixed or fixed/cryo samples, whereas negative values indicate differential expression in fresh, cryo or fixed samples.