Annotation files for eccDNA in mouse brain tissue
收藏资源简介:
This dataset contains 5 types of annotation files for eccDNA in mouse brain tissue, including eccDNA, gene, miRNA, transposable elements (TEs), and cis-regulatory elements (cCREs).eccDNA: The file contains information on the chromosome, start and end positions, and length of eccDNA in the samples.gene: The files include information on the intersection and overlap length of eccDNA in the samples with genes from the mm10 GFF file.miRNA: The files include information on the intersection and overlap length of eccDNA in the samples with miRNA from the mirbase database.TEs: The files include information on the intersection and overlap length of eccDNA in the samples with transposable elements from the RepeatMasker database.cCREs: The files include information on the intersection and overlap length of eccDNA in the samples with cis-regulatory elements (cCREs) from the ENCODE database.
本数据集包含针对小鼠脑组织环状染色体外DNA(eccDNA)的5类注释文件,涵盖eccDNA、基因、微小RNA(miRNA)、转座因子(TEs)以及顺式调控元件(cCREs)五大类别: 1. eccDNA类文件:存储样本中eccDNA对应的染色体、起始与终止位置及序列长度相关信息; 2. 基因类文件:包含样本中eccDNA与mm10参考基因组GFF格式注释文件内基因的交集区域及重叠长度相关信息; 3. 微小RNA(miRNA)类文件:包含样本中eccDNA与miRBase数据库收录的微小RNA的交集区域及重叠长度相关信息; 4. 转座因子(TEs)类文件:包含样本中eccDNA与RepeatMasker数据库中转座因子的交集区域及重叠长度相关信息; 5. 顺式调控元件(cCREs)类文件:包含样本中eccDNA与ENCODE数据库收录的顺式调控元件的交集区域及重叠长度相关信息。



