Additional file 3 of Large scale study of anti-sense regulation by differential network analysis

Functional annotation of change motifs significantly enriched according GO slim classification. For each enriched change motif from Additional file 2, we associate functional keywords from the TAIR annotation. Columns A to D: apple genes, nodes of the change motif. Column E: GO slim category significantly over-represented by the genes present in the change motif. Column F: significant p-value below 0.05 (change motifs are ordered according to this criteria). Column G: Arabidopsis orthologs tagged by the GO slim term associated with the change motif. Columns H to N: Functional keywords from Arabidopsis orthologs (TAIR annotations), keywords consistent with the biological context (fruit ripening in abiotic stress condition) are highlighted in orange. In columns H to N, we use the following abbreviations: ABA: abscissic acid; SA: salicylic acid; JA: jasmonate acid; ROS: reactive oxygen species. The three change motifs described in the manuscript (Fig. 5) are highlighted in blue. (ODS 23 kb)