Supplementary Data S1–S8: Gene lists and RNA-seq metadata for mitochondrial and hypoxia analysis.

Supplementary Data S1-S8 of the manuscript "<b>Hypoxia leads to reduced mito-nuclear gene expression and to increased mtDNA transcriptional pausing in human cells</b>" by Shtolz et al.This Excel file contains eight supplementary tables supporting the study analysis (individual sheets):<b>Supplementary Table S1:</b> Publicly available RNA-seq data used in the study, including accession numbers and experimental conditions.<b>Supplementary Table S2:</b> List of hypoxia markers.<b>Supplementary Table S3:</b> Inventory of nuclear- and mtDNA-encoded OXPHOS structural genes.<b>Supplementary Table S4:</b> Inventory of nuclear- and mtDNA-encoded mito-ribosome genes.<b>Supplementary Table S5:</b> List of excluded RNA-seq experiments (U87 cells).<b>Supplementary Table S6:</b> Nuclear-encoded mitochondrial genes with promoter-proximal HIFα binding sites responsive to hypoxia.<b>Supplementary Table S7:</b> Reference list of human Transcription Factors (Lambert et al., 2018).<b>Supplementary Table S8:</b> Custom list of potential and confirmed mitochondrial regulators (modified from Arroyo et al., 2016).<br>