Comparison of GINDEL, Pindel and Clever-sv on high coverage trio data using downsampling.

The number of possibly wrongly called deletions (outside the parenthesis) and the total number of deletions (inside the parenthesis) are reported based on three creteria. # discordant deletions: number of deletions violating the Mendelian law; # deletions with all-0 genotypes: number of deletions with genotype 0 for both parents and the child in the trio (which contradicts the calling of the deletion from the same trio data); # changed genotypes in downsampling: the number of the genotypes that are called differently for the down-sampled data when compared with the full data results.Comparison of GINDEL, Pindel and Clever-sv on high coverage trio data using downsampling.