Summary of data sets and variables used as an input of the model.

Details on data parsing and calculations may be found in the main text. Cell lines and growth conditions (temperature and medium) denote those used in the ribosome profiling experiments. The numbers marked by an asterix were taken from the RNA Tools and Calculators section at the Invitrogen Website (www.invitrogen.com, accessed April 2013). The coding sequences were downloaded from the following databases: NCBI (www.ncbi.nlm.nih.gov.ftp, accessed May 2012), SGD (www.yeastgenome.org, accessed June 2009), and UCSC (http://genome.ucsc.edu, accessed July 2012).