Transcriptome analysis of Arabidopsis

This study was performed to evaluate the accuracy of an Arabidopsis gene expression predictor. We have constructed an Arabidopsis gene expression predictor, which uses the expression of transcription factors to predict the expression of all non-TF genes. To evaluate the accuracy of the predictor model, mRNA-Seq analysis was performed on two Wild type (Col-0) Arabidopsis samples of two weeks old plant, root and shoot tissues were harvested separately, and the resulted transcriptomes were used for model testing.