Plasmids reconstructed using PLACNET.

For each strain, the type and number of reconstructed plasmids are indicated in columns 2–14. Plasmid numbering (e.g. p1) corresponds with the numbering in Figs. 4–6, and is followed by the plasmid size (in kbp), the number of assigned scaffolds (between brackets), and assigned blaESBL or blaCMY-2 genes, if applicable. The same format is used for the last summarising column.
* Inconsistency between plasmid typing data and WGS data/PLACNET (typing data is between brackets below): 320 (blaTEM-52 on IncI1): blaTEM-52 not found in assembly and thus not linked to an IncI1 plasmid; 681 (blaTEM-52 on IncI1): blaTEM-52 not found in assembly and thus not linked to an IncI1 plasmid; 38.34 (blaTEM-52 on IncI1): blaTEM-52 not found in assembly and thus not linked to an IncI1 plasmid; 1350 (blaCTX-M-1 on IncI1): blaCTX-M-1 found in assembly, but not linked to an IncI1 plasmid; 1365 (blaCTX-M-1 on IncI1): blaCTX-M-1 found in assembly, but not linked to an IncI1 plasmid; 1047 (blaCTX-M-1 on IncI1): blaCTX-M-1 found in assembly, but not linked to an IncI1 plasmid; 1047 (blaCMY-2 on IncK): blaCMY-2 found in assembly, but no IncK plasmid reconstructed; 38.52 (blaCTX-M-1 on IncI1): blaCTX-M-1 found in assembly, but not linked to an IncI1 plasmid.
Plasmids reconstructed using PLACNET.