Additional file 1 of Limited haplotype diversity underlies polygenic trait architecture across 70 years of wheat breeding

Additional file 1: Table S1. Summary of NDM founder varieties and sequencing coverage. Table S2. Summary of overlap in sites called from wheat breeders’ genotyping array and SNP sites called in founders from sequencing data. Table S3. Summary of evidence for introgressions segregating among NDM founders. Table S4. Summary of trial inputs and conditions in 2016-17 (year 1) and 2017-18 (year 2). Table S5. Description of all phenotype measurement methods and timings. Table S6. Best Linear Unbiased Estimate for all phenotypes in 504 RILs. Table S7. Summary of all genome-wide significant QTL associations found for SNP-based and Haplotype-based mapping. Table S8. Gene-Deletion-Score (GDS) loci with GDS-phenotype associations with logP> 6. Table S9. Summary of crossing scheme.