Synthetic human gut microbiota (14 species) assembled in gnotobiotic mice alternately (daily change) fed Prebiotic and fiber-free diets transcriptome

The goal of this study was to determine transcriptome (RNASeq) of a synthetic human gut microbiota asssembled in gnotobiotic mice that were alternated between Prebiotic and fiber-free diets on a daily basis. The synthetic human gut microbiota comprises of the following 14 species: Bacteroides thetaiotaomicron, Bacteroides ovatus, Bacteroides caccae, Bacteroides uniformis, Barnesiella intestinihominis, Eubacterium rectale, Marvinbryantia formatexigens, Collinsella aerofaciens, Escherichia coli HS, Clostridium symbiosum, Desulfovibrio piger, Akkermansia muciniphila, Faecalibacterium prausnitzii and Roseburia intestinalis. Sample origin: mouse cecum