Supporting data for "<b><i>Tangerine</i></b><b>: a </b><b><i>Starship</i></b><b>-like element in the genomes of </b><b><i>Xanthoria </i></b><b>lichen-forming fungi</b><b><i>"</i></b>

The repository contains additional files for the study "Tangerine: a Starship-like element in the genomes of Xanthoria lichen-forming fungi": alphafold.zip: AlphaFold models generated for the Tangerine captains and a selection of tyrosine recombinases from across fungi. Genome_alignments.zip: whole-genome alignments for the four Xanthoria genomes including in the study generated with MUMmer. Genome_annotations.zip: functional annotations for the four Xanthoria genomes including in the study generated using Funannotate (genes) and EarlGrey (repeats). Orthofinder.zip: Orthogroup analysis on 107 ascomycete genomes, including four Xanthoria genomes, made with Orthofinder. The archive includes species and gene trees, as well as the table with orthogroup assignments Starfish_input.zip: input used for running the Starfish pipeline. Includes nucleotide fastas of genome assemblies, annotation files in gff format, and protein fastas for predicted proteome. Starfish_output.zip: output generated by the Starfish pipline. Includes outputs of geneFinder, elementFinder, and regionFinder modules. YR_sequence_phylogeny.zip: protein sequences of selected tyrosine recombinases and the Tangerine captains, sequence alignments, and phylogeny generated using IQ-TREE