SSUsearch reference dataset

This is the reference databases for SSUsearch, including the files below. If you want to updated version of SILVA, please look into the "readme" file.

Ali_template.ssu.silva.fasta:    alignment template for mothur.align
Copy_db_cc.ssu.copyrighter.txt:    SSU rRNA gene copy DB # in copyrighter
Gene_db_cc.ssu.greengene_rep.fasta:    SSU rRNA gene referecne DB in Greengene
Gene_db.ssu.silva_108_rep.fasta:    SSU rRNA gene ref DB in SILVA
Gene_model_org.ssu.fasta:    E.coli SSU rRNA gene sequence, 16s_ecoli_J01695.
Gene_tax_cc.ssu.greengene_rep.tax:    SSU rRNA gene taxon ref DB in Greengene
Gene_tax.ssu.silva_108_rep_family.tax:    SSU rRNA gene taxon ref DB in SILVA
Hmm.ssu.hmm:    2 hmms for bac + arc and euk

Please cite the original paper: 

Microbial Community Analysis with Ribosomal Gene Fragments from Shotgun Metagenomes

Jiarong Guo, James R. Cole, Qingpeng Zhang, C. Titus Brown, James M. Tiedje

Appl. Environ. Microbiol. Dec 2015, 82 (1) 157-166; DOI: 10.1128/AEM.02772-15