High-coverage genomes from Ranis13 and Zlaty kun, and sequencing data from several other Ranis specimens (screening data, 1240k captures, Archaic admixture captures and Y-chromosome captures)

High-coverage genomes of Ranis13 and Zlaty kun obtained through shotgun sequencing. For the remaining specimens from Ranis, we performed SNP enrichment capture using the 1240k array for population genetics analyses, and the capture using the Archaic Admixture array, specifically Panel 4, for investigating Neanderthal and Denisovan ancestry. For libraries from two of the specimens, RNI010 and RNI087, we performed both complete Y-chromosome capture and YMCA capture. In addition to these, we also provide the shallow shotgun sequences produced from each library for screening purpose. All capture and shallow shotgun data presented here were aligned to the human reference genome (hg19, GRCh37), filtered for PCR duplicates, a minimum length of 30 base pairs and minimum mapping quality of 25. Data from the libraries which constructed the high-coverage genomes were filtered for length cutoffs provided by SpAl, and were not filtered for mapping quality.