Phylogenomics of NCLDV

25 files, including single gene alignments raw and filtered, concatenated gene alignments raw and filtered, and phylogenomic tree files <br> Single-gene alignments (untrimmed) for phylogenomic analysisDataset by Elisabeth Hehenberger<br>Single-gene alignments for 10 proteins in fasta format. Alignments were manually curated (removal of highly divergent and/or paralogous sequences, merging of sequence fragments) based on single-gene phylogenies. Merged sequences are indicated in the sequence name. Final alignments were performed with the MAFFT L-INS-i algorithm.<br>File name convention:OG numbers stand for the orthogroups recovered in this studyNCVOG numbers stand for the orthogroups recovered in:<br>N. Yutin, Y. I. Wolf, D. Raoult, E. V Koonin, Eukaryotic large nucleo-cytoplasmic DNA viruses: Clusters of orthologous genes and reconstruction of viral genome evolution. Virol J. 6, 223 (2009).<br>Sequence name convention:Virus name; GenBank accession(except for the ChoanoV sequences)<br><br>Single-gene alignments (trimmed) for phylogenomic analysisDatasetmodified on 21.07.2018, 15:20 by Elisabeth HehenbergerTrimmed single-gene alignments for 10 proteins as used for concatenation in fasta format. Trimming was performed with BMGE using the default gap threshold and the BLOSUM30 similarity matrix.<br>File name convention:OG numbers stand for the orthogroups recovered in this studyNCVOG numbers stand for the orthogroups recovered in:<br>N. Yutin, Y. I. Wolf, D. Raoult, E. V Koonin, Eukaryotic large nucleo-cytoplasmic DNA viruses: Clusters of orthologous genes and reconstruction of viral genome evolution. Virol J. 6, 223 (2009).<br>Sequence name convention:Virus name; GenBank accession(except for the ChoanoV seqeunces)<br>Concatenated alignments for phylogenomic analysisDatasetmodified on 21.07.2018, 16:50 by Elisabeth HehenbergerConcatenated alignments underlying phylogenomic trees.A README file contains details concerning the individual files.<br><br> Phylogenomic trees in newick formatDataset by Elisabeth Hehenberger<br>Phylogenomic reconstructions in newick format. All phylogenomic trees described in the publication can be found in newick format in this file, including a detailed description for each tree.<br>