Genome assemblies of a diploid chamomile (Matricaria recutita) genotype. Chamomilla TRITEX

Here we are describing TRITEX haplotype-resolved assembly pipeline requiring reference sequence, long-reads and Hi-C reads. Pipeline will be processed in both shell scripts and R prompt. German chamomile is one of the most important medicinal plants worldwide. But not many studies have been done until now. We are presenting de novo chromosome-level reference genome of wild diploid chamomile with an N50 of 322Mb and a total length of 2.60Gb. For PacBio long-read sequencing, four single-molecule real time (SMRT) library was prepared and generated total of 7,281,234 reads which is about 162Gb. For Hi-C read sequencing, total of 3,710,914,879 reads were generated which is about 408Gb.