Supplemental Material for Vendramin et al., 2020

p.p1 {margin: 0.0px 0.0px 0.0px 0.0px; font: 11.5px Helvetica; color: #141414} span.s1 {font: 12.0px Helvetica; color: #000000} Figure S1: Rab17 RT-qPCR Figure S2: MDS clusteringFigure S3: DNG RT-qPCRFigure S4: Promoter methylation in <i>Mop1</i> WT and <i>mop1-1 </i>mutant for DEGs and non-DEGsFigure S5: Heatmap (Log2 FC) of TF Network DEGs p.p1 {margin: 0.0px 0.0px 0.0px 0.0px; font: 11.5px Helvetica; color: #141414} p.p2 {margin: 0.0px 0.0px 0.0px 0.0px; font: 12.0px Helvetica} span.s1 {font: 12.0px Helvetica; color: #000000} span.s2 {color: #000000} Table S1: DEGs no. for DE analysis using different biological replicates no. Table S2: Maize protein phosphatases class A (PP2C-A) Table S3: Genes differentially expressed in <i>mop1-1 </i>mutant seedling &amp; SAM Table S4: Number of GO terms found for DEGs in four groups Table S5: Number of genes found in each model group and subgroup Table S6: High-confidence miRNAs File S1: Groups I-VII log2FC File S2: GO term enrichment per DEG group File S3: Homologous TFs File S4: Tiers and Downstream genes File S5: Group model parameters per gene File S6: Genome-wide siRNA changes in <i>mop1-1</i> mutant File S7: TGS2 target genes File S8: SeqCap DNA methylation ratios in all sequence contexts File S9: Promoter DNA methylation for<i> Mop1</i> wildtype ABA-responsive DEGs File S10: MOP1-ABA targets with a loss of siRNA and DNA methylation at ABRE sites<br>