Additional file 2 of Genetic and functional interaction network analysis reveals global enrichment of regulatory T cell genes influencing basal cell carcinoma susceptibility

Additional file 2: Supplementary Tables. Table S1. Independent common variants associated with BCC in GWAS analysis at P-value < 5E-8. Table S2. Common variants identified by GCTA-COJO analysis of BCC at P < 5E-8 . Table S3. Quantification of the correlation of eQTL effects (r̂ ) between blood and skin samples. Table S4. BCC-associated CpG methylation sites via SMR analysis of the GWAS meta-analysis and mQTL data. Table S5. Mapping the BCC-associated CpG methylation sites to the BCC-associated genes via SMR analysis using the eQTLGen eQTL data. Table S6. BCC GWAS-FI network Pathway Analysis. Table S7. BCC GWAS-FI network GO-Process Analysis. Table S8. BCC SMR-FI network Pathway Analysis. Table S9. BCC SMR-FI network GO-Process Analysis. Table S10. Pubmed search of SMR-HEIDI candidate genes biological processes. Table S11. BCC-associated genes identified via SMR analysis using GTEx and eQTLGen eQTL data. Table S12. Pearson’s correlation of GTEx and eQTLGen eQTL data. This excel file contains 11 supplementary tables, related to the main text.