Acartia tonsa experimental evolution epigenetics

snp file: `snp_results_table.txt`

Methylation results table: `methylation_results_table.txt`

Columns 4-23 are the methylation freqiencies of each replicate and treatment. Names are treatment_generation_replicate where AA= ambient, AH=acidification, HA=warming, HH=OWA.

Columns 24-28 are the mean methylation values from each treatment

Columns 29-31 are the p values calculated from edgeR

Columns 32-34 are fdr correct p-values

Columns 35-37 = if methylation change is > 10%

Class = locus class for each methylation site

annotation = corresponding gene annotation

distance = location from gene if not genic

conversion efficiency: `conversion_efficiency.txt`

annotation: `tonsa_trinotate_report.txt`

Differential gene expression data:

OWA vs. ambient `DGE_HHHH_vs_AAAAA.txt`

OWA plasticity: `DGE_HHHH_vs_AAHH.txt`

Ambient plasticity: `DGE_AAAA_vs_HHAA.txt`