Advancing source tracking: systematic review and source-specific genome database curation of fecally shed prokaryotes

This repository contains several files describing the data discussed in Lindner et al's "Advancing source tracking: systematic review and source-specific genome database curation of fecally shed prokaryotes". "database.fna" = concatenation of the (draft or complete) genome sequences described in the paper (n=12,730 source associated prokaryotic genomes) which passed quality checks and are species-level representatives (i.e., dereplicated at 95% ANI). "gdef.txt" = a manifest describing which sequences belong to which genomes. "sources.txt" = a manifest describing which genomes belong to which sources. The sources this database covers: Source Category Species-level genome count Source-specificspecies-level genome count Bird 56 40 Cat 86 6 Chicken 1314 887 Cow 39 15 Dog 139 56 Pig 2764 2035 Ruminant 740 714 Human 4484 3350 Wastewater 3108 3097 See publication for further details.