five

b73_v1

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Network for the cold-sensitive B73 maize line, V1 stage (the collar of the first leaf is visible). The size of node is proportional to its Degree (number of connections). Key to colors:black circle - node which transcription factor binding site was overrepresented (according to the article, not yet published) blue "V" - node upregulated in transcriptomic studies (Sobkowiak et al. 2014, 2016, https://doi.org/10.1186/s12864-016-2453-4; https://doi.org/10.1007/s11103-014-0187-8) Key to node columns: Name - maize gene identifier (gramene, agpv3 genome version) tf name art - transcription-factor name used in the article (not yet published) Degree - number of connections gene description agpv3 - (description provided by gramene) tf family - transcription-factor family (Grassius, https://www.grassius.org/) tf grassius - transcription-factor name (Grassius, https://www.grassius.org/) Key to edge columns: string combined score - interaction score according to STRING (Szklarczyk et al. 2017, https://doi.org/10.1093/nar/gkw937)
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2020-10-19
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