oriTDB
收藏国家生物信息中心2025-10-11 更新2025-08-23 收录
下载链接：
https://bioinfo-mml.sjtu.edu.cn/oriTDB2
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资源简介：
oriTDB comprises 122 experimentally validated and 22,927 predicted oriTs within bacterial plasmids, Integrative and Conjugative Elements, and Integrative and Mobilizable Elements. Additionally, oriTDB includes details about associated relaxases, auxiliary proteins, type IV coupling proteins, and a gene cluster encoding the type IV secretion system. The database also provides predicted secondary structures of oriT sequences, dissects oriT regions into pairs of inverted repeats, nic sites, and their flanking conserved sequences, and offers an interactive visual representation. Furthermore, oriTDB includes an enhanced oriT prediction pipeline, oriTfinder2, which integrates a functional annotation module for cargo genes in bacterial MGEs.
提供机构：
Shanghai Jiao Tong University
创建时间：
2025-07-01
