Reference data for WhichTF software

To identify functionally important transcription factors (TFs), we present WhichTF, a computational method that ranks TFs based on experimentally characterized chromatin accessibility measurements.

This dataset contains the reference data for this new method described in the following paper:

Y. Tanigawa, E. S. Dyer, and G. Bejerano. WhichTF is dominant in your open chromatin data?  PLOS Comput Biol 18(8): e1010378. (2022). https://doi.org/10.1371/journal.pcbi.1010378

Here, we provide the pre-computed reference for the software. There are 4 tar.gz compressed files, each of them correspond to one genome assembly of human or mouse genomes (human: hg19 and hg38 and mouse: mm9 and mm10).

Please see our manuscript and our Bitbucket repository (https://bitbucket.org/bejerano/whichtf) for more information about our method and the software.

If you use this dataset, please cite our pre-print.