Additional file 2: of The whole genome sequence of the Mediterranean fruit fly, Ceratitis capitata (Wiedemann), reveals insights into the biology and adaptive evolution of a highly invasive pest species

Supplementary Tables S1–S26. Table S1 C. capitata genome and RNA-seq source material and sequencing runs. Table S2 Pluralibacter gergoviae genome metrics. Table S3 P. gergoviae genes associated with general functional categories. Table S4 BUSCO genome assembly comparisons between C. capitata, D. melanogaster, and Bactrocera species. Table S5a Orthology tables - Copy numbers. Table S5b Orthology tables - Orthologous groups. Table S5c Orthology tables - Counts by species. Table S6 Chromosomal positions for mapped scaffolds. Table S7 C. capitata transposable element sequences. Table S8 C. capitata microRNA sequences. Table S9 microRNA/siRNA/piRNA machinery in C capitata. Table S10 C. capitata odorant-binding protein (OBP) genes. Table S11 C. capitata odorant receptor (OR) genes. Table S12 C. capitata gustatory receptor (GR) gene assignments. Table S13 C. capitata ionotrophic receptor (IR) gene assignments. Table S14 C. capitata aquaporin genes. Table S15 Immunity-related gene comparisons for C. capitata, D. melanogaster, and M. domestica. Table S16 P450 genes in the C. capitata genome. Table S17 Carboxylesterase genes in the C. capitata genome. Table S18 Glutathione S-transferase (GST) genes in the C. capitata genome. Table S19 CysLGIC superfamily genes in C. capitata and other insect genomes. Table S20 C. capitata cuticle protein genes. Table S21 Putative cuticle proteins per family in the C. capitata genome. Table S22 Cuticle protein gene clusters in the C. capitata genome. Table S23 C. capitata sex-determination gene orthologs. Table S24 Putative seminal fluid protein (SFP) genes in the C. capitata genome. Table S25 C. capitata genes related to the apoptotic pathway of D. melanogaster. Table S26 Community RNA-Seq data for the genome assembly (XLSX 6240 kb)