Chemical Response in Zebrafish

Zebrafish morphology and behavioral data in response to toxin exposure. "Morphology" data is binary (dichotomous) meaning that a 0 is recorded if the phenotype (endpoint) is not observed and 1 if the phenotype is observed. "Behavioral" is light photomotor response data where movement (value) is measured at time intervals of 6 seconds (t0 - 0 seconds, t1 - 6 seconds, t2 - 12 seconds). "Mapping" data is used to map chemical identifiers to chemical names and CAS numbers. This repository contains 5 files - 2 morphology, 2 mapping, and 1 behavioral. Details regarding each file's columns are listed below: morphology:chemical.id: (String) An identifier for the chemical. Name of column must include a period. These identifiers must be the same as in the chemical mapping filebottle.id: (String) An identifier for the bottle. Name of column must include a period.conc: (Numeric) The concentration of measurements. The units are always uM. No units should be included in this column. Values must be numericplate.id: (String) An identifier for the zebrafish plate. Name of column must include a period.well: (String) An identifier for the zebrafish's well on the plate.date: (String) The date the data was collected written as YYYYMMDD. No dashes or anything else.endpoint (String): An identifier for the endpoint measured.value (Numeric): Whether the endpoint was observed in the fish (1) or not (0). No other values allowed.behavioral:chemical.id: (String) An identifier for the chemical. Name of column must include a period. These identifiers must be the same as in the chemical mapping filebottle.id: (String) An identifier for the bottle. Name of column must include a period.conc: (Numeric) The concentration of measurements. The units are always uM. No units should be included in this column. Values must be numericplate.id: (String) An identifier for the zebrafish plate. Name of column must include a period.well: (String) An identifier for the zebrafish's well on the plate.variable: (String) The time measurement with the letter "t" appended to the time unit (which is 6 seconds). So "t0" is 0 seconds, "t1" is 6 seconds, etc.value: (Numeric) The movement measurement. Any value with the range [0, inf). NA values are acceptable.chemical mapping:bottle.id: (String) An identifier for the bottle. Name of column must include a period. If missing, use NA.chemical.id: (String) An identifier for the chemical. Name of column must include a period. These identifiers must be the same as in the morpohology/behavioral files.chemical.name: (String) The chemical name, written with underscores for chemicals instead of commas. 1,2-dibromoethane should be 1_2-dibromoethane. If missing, use NA.casrn: (String) The CAS number if applicable. If missing, use NA.