Rogue taxa identified by the RogueNaRok (RNR) analyses, listed in the order in which they were identified and removed.
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The RBIC (relative bipartition information content) for the reduced consensus tree, after pruning all taxa up to and including any given rogue taxon, is shown in the last column. Ingroup rogue taxa are shown in bold. * Rogue taxon sets = rogue taxa identified on each successive one-at-a-time pass through the taxa. Each such pass, after the first pass, starts from a reduced taxon set from which all previously-identified rogues have been removed. Following the removal of rogue taxon sets A–C, no further rogue taxa could be identified in the entire data set. Rogue taxon set D was identified in an independent analysis of just Yponomeutoidea+Gracillarioidea, excluding other outgroups. A: 139 taxa x 8–27 genes. Initial score = 0.760931, # of partitions in reduced consensus tree = 973. B: 128 taxa (11 rogue taxa deleted from A). Initial score = 0.864427, # of partitions = 443. C: 125 taxa (3 rogue taxa deleted from B). Initial score = 0.870656, # of partitions = 337. D: 91 taxa (Yponomeutoidea+Gracillarioidea). Initial score = 0.873182, # of partitions = 272. ** SC (sequence data completeness) = (# of nucleotides actually sequenced/total # of targeted nucleotides) x 100. ***Raw Improvement: the improvement in support (sum of all bootstrap values) for the reduced consensus tree, if the taxon in question is pruned AND all previously identified rogue taxa are also pruned.
创建时间:
2013-01-31



