Supplementary Files for "Metagenome-assembled genomes of three Hepatoplasmataceae provide insights into isopod-mollicute symbiosis"

mollicutes.phylogenomic.iqtree.treefile: Maximum-likelihood phylogenomic tree of 155 mollicutes based on 41 single-copy proteins, provided in the Newick format
faa_aligned_trimmed.zip: Multiple sequence alignments of 41 single-copy protein-coding genes conserved across 155 mollicutes
16S.iqtree.treefile: Maximum-likelihood phylogenetic tree of mollicute 16S rRNA sequences, provided in the Newick format
16S.aligned.trimmed.fa: Multiple sequence alignment of mollicute 16S rRNA sequences
methods.html and methods.md: Bioinformatic scripts used in this study, provided in the HTML and Markdown formats, respectively.
PhyloFlash.zip: PhyloFlash output files for isopod Illumina shotgun sequencing data
BDV029231.1.zip: ColabFold output files for the beta-barrel-containing protein BDV029231.1
HCTKY_2320_Ig.zip, TYPL_3910_sandwich.zip, and HPPSJP_2240_Ig.zip: ColabFold output files for the beta-sandwich structures in Hepatoplasmataceae large, repetitive ORFs

Supplementary_Meterials.pdf: PDF file containing Supplementary Figure 1 and Supplementary Tables 1-5