Reference files for TE analysis (v1.1)
收藏Mendeley Data2024-01-31 更新2024-06-29 收录
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https://figshare.com/articles/dataset/Reference_files_for_TE_analysis_v1_1_/19394723
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资源简介：
README - Transposable Element Differential Expression Analysis Protocol from RNA-seq Data########################### Supplied reference files - Reference genome sequence, predicted RNA sequences and genome annotations (GCA_014300015.1; 2020 genome) These files are publicly available at: https://www.ncbi.nlm.nih.gov/bioproject/PRJNA599375/ GCA_014300015.1_MPIA_NFZ_2.0_genomic.fna GCA_014300015.1_MPIA_NFZ_2.0_genomic.gtf GCA_014300015.1_MPIA_NFZ_2.0_rna_from_genomic.fna - FishTEDB sequences for N. furzeri transposons This file can be obtained at: http://www.fishtedb.org/project/species-detail?species=Nothobranchius+furzeri Nothobranchius_furzeri_FishTEDB_TEs.fa - Modified reference files including TE sequences/annotations for * kallisto/transcriptome based method: GCA_014300015.1_MPIA_NFZ_2.0_rna_from_genomic_WithFishTEDBv4.fasta * STAR/genome based method: GCA_014300015.1_MPIA_NFZ_2.0_genomic.fna.masked GCA_014300015.1_MPIA_NFZ_2.0_gene_and_RepeatMasker_FishTEDB_annotations.gtf GCA_014300015.1_MPIA_NFZ_2.0_genomic.fna.out
创建时间：
2024-01-31
