Alignment of the Serine Protease family

Dataset containing the files for the alignment of the Serine Protease protein family. serprot_ref.faa: manually curated alignment of 1390 members of the Serine Protease family for the Halabi Sector paper. serprot.hmm: HMM profile made using hmmbuild from the serprot_ref.faa alignment. serprot_matches.stk: Stockholm file containing the output of the hmmsearch on the UniProt database using the serprot.hmm profile. new_aln0.faa: FASTA file with the MSA after conversion from Stockholm using the stk2fasta.pl script. new_aln.faa: FASTA file with the MSA after running the code of the 00_alignment_cleaning.ipynb notebook. iter_aln.faa: FASTA file with the MSA after running the code of the 01_compact_alignment.ipynb notebook. MSA file MSA description L (number of positions) M (number of sequences) serprot_ref.faa Reference alignment of Serine Proteases, manually curated for the Halabi Sector paper. 823 1 390 new_aln0.faa Alignment coming from the hmmsearch using the HMM profile made with serprot_ref.faa. 823 189 304 new_aln.faa Alignment coming from the 00_alignment_cleaning.ipynb notebook. 693 101 543 iter_aln.faa Alignment coming from the 01_compact_alignment.ipynb notebook. 260 101 543