Additional file 1 of Phylogenomics of the Olea europaea complex using 15 whole genomes supports recurrent genetic admixture together with differentiation into seven subspecies

Additional file 1: Table S1. Number of small insertions/deletions (indels) per kilobase. The columns in order show the number of homozygous indels, heterozygous indels, total number of indels, large indels (>100 nucleotides), indels in genic regions. The O. europaea individuals are in rows. Table S2. Number of genes of each O. europaea individual containing indels and GO term enrichment analysis of those genes. Table S3. Analysis of the positions with relative coverage of alternative alleles in heterozygous sites values ranging from 0.05 to 0.25 (positions P25). The columns show: name of the individual, number of positions P25, number of P25 positions present in repetitive regions, percentage of P25 positions present in repetitive regions, number of P25 positions present in genes, percentage of P25 positions present in genes, number of genes associated with P25 positions, GO term enriched function of the genes associated with P25 positions with p-value < 0.01. Table S4. Admixture coefficient (Q) of each individual per cluster. This table was used to create Fig. 4d.