Spectral Cluster Supertree: Analysis Data

Contains all datasets used in the Spectral Cluster Supertree paper. The datasets are composed of a set of rooted model trees, and rooted source trees to predict them. Please cite the appropriate papers, depending on which of the datasets you use. The birth_death folder contains our own dataset generated for our paper (where the generation process is explained), it aims to mimic what may be seen through divide and conquer algorithms for phylogenetic reconstruction. Parameters used to simulate an alignment were simulated under parameters estimated from a sequence alignment of 3 bacterial species (Kaehler et al., 2015) - see alignment folder. The SMIDGenOutgrouped folder contains both the SMIDGenOG (Fleischauer and Böcker, 2016) and SMIDGenOG-5500 dataset (Fleischauer and Böcker, 2017). The SuperTriplets folder contains the SuperTriplets dataset (Ranwez et al, 2010).