Dataset of microscope images of prefrontal cortex from wistar rat tissue after an induced stroke

Microscopic images were captured with the Leica ICC50HD camera mounted on the Leica DM500 microscope, performed with fixed parameters in magnification 20x, and 56% horizontal and 40% vertical overlap. The rows and high-resolution images was generated using the captured images and an stitched algorithm using the homography matrices.
The homography matrices were obtained from a small number of correspondences manually selected between each pair of images horizontal displacements and between pair of rows in vertical displacement.
Raw microscope images PNG format format.
High-resolution image PNG format , pixel size 0.3 µm, area 92.48 mm2.
Homography matrices HDF5 files

Dataset organization
Folder -> Filename -> Description
\rawImages\ -> image_Row_RR_XX.png -> Images of tissue numbered as XX (varies each row: 01 up to 45) of images rows numbered as RR (01-36)
\stitched\tissue\ -> brainTissueImage.png -> High-resolution obtained.
\stitched\rows -> image_Row_XX.png -> Images for each row numbered as RR (01-36).
\homographies\ -> homography_images_Row_RR.h5
\homographies\ -> homography_Rows.h5 -> Homography matrices between each pair of images per row numbered as RR (01-36).