Additional file 1 of Structural and functional analysis of the active cow rumen’s microbial community provides a catalogue of genes and microbes participating in the deconstruction of cardoon biomass

Additional file 1: Table S1. Composition of the ingredients and calculated composition of the diets fed to cannulated heifers during the trial; Table S2. Chemical composition of the cardoon residue in the nylon bags, rumen solid fraction, and undigested cardoon biomass; Table S3. Relative abundance and prevalence of amplicon sequence variants (ASVs) in cardoon (CRD) and rumen (RMN) samples; Table S4. Alpha diversity estimators for cardoon (CRD) and rumen (RMN) samples; Table S5. Differentially abundant amplicon sequence variants (ASVs) predicted via GLM–ANOVA and k-mean clustering results; Table S6. MMseqs2 LCA taxonomy report used to generate the Sankey plot in Pavian; Table S7. eggNOG annotation of transcript in RMN- and CRD-adherent microbial community; Table S8. MMseqs2 transcriptome annotation against the Carbohydrate active enzymes (CAZymes) database; Table S9. CAZy families frequencies; Table S10. Transcripts associated to differentially expressed seed orthologs; Table S11. KEGG module enrichment analysis of transcripts associated to differentially expressed seed orthologs; Table S12. Differentially expressed transcripts within major fiber degrading Taxon; Table S13. Differentially expressed CAZy transcripts within major fiber degrading Taxon; Table S14. Over-representation analysis (ORA) results of the CAZy families over-represented within the CAZy-coding transcripts more expressed in the CRD-enriched microbial community; Table S15. Micromineral and vitamin content supplemented to the fed.