GeneAccord combined results for the AML cohort [12].

Ranked list of the gene pairs tested with the GeneAccord exact combined test on the cohort of 123 AML patient samples. For each gene pair, the column nt is the total number of patients exhibiting both gene mutations, n the number of those patients whose trees are not linear or star shaped and ncx the number of times the genes are clonally exclusive within those n trees. The columns nl and ns contain the number of linear and star trees. Δ is the clonal exclusivity score indicating enrichment of clonal co-occurrence (positive) or clonal exclusivity (negative) with ±∞ corresponding to hitting the numerical optimisation bounds. LLR is the log-likelihood ratio statistic, p is the p-value and q the adjusted p-value after Benjamini-Hochberg correction. Only gene pairs with n > 3 are considered.