1The second allele represents the minor allele of each marker. 2Minor allele frequency calculated in our cohort. 3Minor allele frequency reported for Caucasians in the HapMap CEU. 4The association ana
LH = Leghorn layers, BEH = Baier Huang chickens, NDH = Ningdu Huang chicken, XH = Xinghua chicken, RJF = Red Jungle Fowl. The number in brackets was the number of chickens used. Hardy-Weinberg equilib
Results of GATK genome analysis, used for allele frequency plots. Newly generated FASTQ sequencing files along with those obtained from SRA were trimmed and filtered using fastp (Chen et al., 2018)