Figure 1 data plus new sequences.zip

These files are based on the Figure 1 data sets with the addition of the three newly sequenced complete genomes from this study (A/chicken/Japan/1925, A/duck/Manitoba/1953, and A/equine/Detroit/3/1964). For PB1, several sequences from South America were also added. Contains (1) the nexus format sequence alignments, (2) the BEAST XML input files for the HSLC analyses (SRD06 substitution model), (3) the maximum clade credibility (MCC) tree files, and (4) a PDF of the full tree figures corresponding to the 8 panels in Figure 1 (except with the additional sequences and using the SRD06 substitution model).