Genomic analysis of Legionella pneumophila in the drinking water system of a large building over 25 years

Supplementary material for 'Genomic analysis of Legionella pneumophila in the drinking water system of a large building over 25 years', as described in Microbial Genomics.Annotation (.gff) of 150kb plasmid identified in nine isolates to match supplementary file 1. Data from isolate ZIB9046 assembled with unicycler v0.4.8 and annotated with Bakta v1.9.3.Nucleotide sequence (.fna) of 150kb plasmid identified in nine isolates. Data from isolate ZIB9046 assembled with unicycler v0.4.8 and annotated with Bakta v1.9.3.Accessions of samples from study. Table S1.Recombinations identified within the ZIB cluster. Gubbins identified recombinations are shown aligned with the phylogeny rooted as in Figure 2. Genome annotation above the recombinations shows the coding sequences (CDSs) in blue along the chromosome. Below the recombination tracks, where recombination loci in single isolates are shown in blue, and those identified in more than one isolate are shown in red, is a graph of frequency with key locations annotated. Figure generated using Phandango (ref 15).