Additional file 3 of Association analysis and functional annotation of imputed sequence data within genomic regions influencing resistance to gastro-intestinal parasites detected by an LDLA approach in a nucleus flock of Sarda dairy sheep

Additional file 3: Table S11. Full characterisation of the retained SNPs: high or moderate impact variants or most significant variants from the association analysis mapping within the QTL regions. Description of the retained SNPs that mapped within the QTL regions identified in the present work: functional annotation from SNPeff; nominal significance level (− log10(nominal p-values) from the WGS based association analysis, GO biological process enriched term from WebGestalt analysis; and study from which the candidate GIN-activated gene listed by Chitneedi et al. 2020 [51] was identified. The SNP positions are from the Ovis aries genome assembly v4.0.