Phylogenomics and functional annotation of 530 non-<i>Saccharomyces </i>yeasts from winemaking environments reveals their Fermentome and Flavorome

Assembled genomes were annotated using AUGUSTUS software v.3.4.0 (Stanke and Morgenstern 2005), considering 16 different pre-trained models, chosen as belonging to the Ascomycota phyla (11) or the Basidiomycota phyla (5): Ascomycota – <i>S. cerevisiae S288c</i>, <i>C. albicans</i>, <i>Meyerozyma (Candida) guilliermondii</i>, <i>C. tropicalis</i>, <i>Debaryomyces hansenii</i>, <i>Eremothecium gossypii</i>, <i>Kluyveromyces lactis</i>, <i>Lodderomyces elongisporus</i>, <i>Scheffersomyces (Pichia) stipitis</i>, <i>Schizosaccharomyces pombe</i>, and <i>Yarrowia lipolytica</i>; Basidiomycota – <i>Cryptococcus neoformans</i>, <i>Coprinus</i>, <i>Laccaria bicolor</i>, <i>Phanerochaete chrysosporium</i> and <i>Ustilago maydis</i>. Results were manually reviewed to select the most robust annotation in terms of predicted coding genes. The potential coding regions reported by AUGUSTUS were extracted from the complete genomes to FASTA files.